Group Photo_Journal Club 2010
We are glad to complete another a year-round jounal club. Great job, mate~~
We published the result of a five-year work in Science Advances on July 7th. Particularly we thanks to Dr. Naohisa Wada and Mr. Ming-Chung Hsu for their great contributions to the work. In this work, we provide an unprecedented high-resolution picture of coral-associated microbial aggregates on a wide range of aspects, including ecology, number, density, distribution, genomes, chemical traits and so on.
The paper can be found in the following link:
One cooperation work with Prof. Minamisawa at Tohoku University and the core lab of NanoSIMS, Academia Sinica. We found the first in vivo evidence for the co-occurrence of methane oxidation-nitrogen fixation in a single bacterial cell in rice root.
Figure 1. A hypothetical scheme for the ecological interactions of type II methanotrophs-plant host-other soil bacteria in the methane oxidation and nitrogen fixation.
Proteomic profiles of Endozoicomonas montiporae published by Ya-Fan Chan, Chia-Yu Chen, Chih-Ying Lu, Yung-Chi Tu, Kshitij Tandon, Shinya Shikina and Sen-Lin Tang*
Happy New Year, 2022！！！
Congratulations to Mr. Yu-Hsiang Chen and Miss Ching-Yun Huang. Two papers have been accepted as follows:
Ching-Yun Huang, Jiang-Shiou Hwang, Hideyuki Yamashiro, Sen-Lin Tang, 2021, Spatial and cross-seasonal patterns of coral diseases in Taiwan’s reefs: High prevalence and regional variation, Diseases of Aquatic Organisms, accepted.
(This is the first coral disease survey in Taiwan!)
Yu-Hsiang Chen , Pei-Wen Chiang , Denis Rogozin , Andrey Degermendzhy , Hsiu-Hui Chiu, Sen-Lin Tang, 2021, Salvaging high-quality genomes of microbial species from a meromictic lake using a hybrid sequencing approach, Communication Biology, accepted.
(This is the paper to introduce a hybrid sequencing approach, illumina and nanopore sequencing methods; we used the datasets of Lake Shunet, Siberia)
Congratulations to all the authors! We have another four papers published recently. Here particularly would like to point out a paper (Yu-Hsing Chen et al., Environmental Microbiology, 2021) which has been conducted more than 10 years and finally was published. It is really exciting!
Yu-Hsiang Chen, Hsing-Ju Chen, Cheng-Yu Yang, Jia-Ho Shiu, Daphne Z. Hoh, Pei-Wen Chiang, Wenhua Savanna Chow, Chaolun Allen Chen, Tin-Han Shih, Szu-Hsien Lin, Chi-Ming Yang, James Davis Reimer, Euichi Hirose, Budhi Hascaryo Iskandar, Hui Huang, Peter J. Schupp, Chun Hong James Tan, Hideyuki Yamashiro, Ming-Hui Liao, Sen-Lin Tang#, 2021, Prevalence, complete genome, and metabolic potentials of a phylogenetically novel cyanobacterial symbiont in the coral-killing sponge, Terpios hoshinota, Environmental Microbiology, accepted.
Yu-Ting Wu, Pei-Wen Chiang, Kshitij Tandon, Denis Yu Rogozin, Andrey G. Degermendzhy, and Sen-Lin Tang*, 2021, Single-cell genomics-based analysis reveals a vital ecological role of Thiocapsa sp. LSW in the meromictic Lake Shunet, Siberia, Microbial Genomics, accepted.
Chih-Wei Wang, Yu-Hsiang Yu, Chun-Yao Wu, Ru-Ying Feng, Kshitij Tandon, Ying-Lien Chen*, Sen-Lin Tang*, 2021, Detection of pathogenic and beneficial microbes for roselle wilt disease, Frontiers in Microbiology, accepted.
Shan-Hua Yang, Chi Chen, Yunli Eric Hsieh, Sung-Yin Yang, Hau-Wen Li, Tzu-Yun Ching, Chia-Hui Wang, Ching-Fong Chang, Sen-Lin Tang*, Guan-Chung Wu*, 2021, Bacterial Dynamics in the Accessory Nidamental Gland of Sepioteuthis lessoniana throughout Maturation. Microbes Environ 36: ME2103
Congratulations! Finally our 7-years study has been accepted. The work is to test the hypothesis of Functional Redundancy of microbial community in which we conducted in situ empirical experiments to test the hypothesis of Functional Redundancy. The conclusion of this study is that functional redundancy is dynamic in a given microbial community, and we propose a new hypothesis, most of microbial community should be dynamic partial functional redundancy.
Kshitij Tandon, Min-Tao Wan, Chia-Chin Yang, Shan-Hua Yang, Bayanmunkh Baatar, Chih-Yu Chiu, Jeng-Wei Tsai, Wen-Cheng Liu, Chen Siang Ng and Sen-Lin Tang, 2021, Aquatic microbial community is partially functionally redundant: insights from an in situ reciprocal transplant experiment, Science of the Total Environment.
Yu-Hsiang Chen, Shan-Hua Yang, Kshitij Tandon, Chih-Ying Lu, Hsing-Ju Chen, Chao-Jen Shih, Sen-Lin Tang, 2021, Potential syntrophic relationship between coral-associated Prosthecochloris and its companion sulfate-reducing bacterium unveiled by genomic analysis, Microbial Genomics, accepted.
Say bye to the year 2020!
There are some papers published in the past four months. Congratulate all the authors for the effort.
@Wu WK, Panyod S, Liu PY, Chen CC, Kao HL, Chuang HL, Chen YH, Zou HB, Kuo HC, Kuo CH, Liao BY, Chiu THT, Chung CH, Lin AY, Lee YC, Tang SL, Wang JT, Wu YW, Hsu CC, Sheen LY, Orekhov AN, Wu MS., 2002, Characterization of TMAO productivity from carnitine challenge facilitates personalized nutrition and microbiome signatures discovery. Microbiome 19;8(1):162
@Kshitij Tandon#, Bayanmunkh Baatar#, Pei‐Wen Chiang, Narangarvuu Dashdondog, Bolormaa Oyuntsetseg and Sen‐Lin Tang*, 2020, A Large‐Scale Survey of the Bacterial Communities in Lakes of Western Mongolia with Varying Salinity Regimes, Microorganisms, 8(11), 1729
@Shan-Hua Yang†, Ching-Hung Tseng†, Hsueh-Ping Lo, Pei-Wen Chiang, Hsing-Ju Chen, Jia-Ho Shiu, Hung-Chun Lai, Kshitij Tandon, Naoko Isomura, Takuma Mezaki, Hiromi Yamamoto, Sen-Lin Tang*, 2020, Locality Effect of Coral-associated Bacterial Community in the Kuroshio Current from Taiwan to Japan, Frontiers in Ecology and Evolution, 8:339
@Ya-Fan Chan, Pei-Wen Chiang, Kshitij Tandon, Denis Rogozin, Andrey
Degermendzhi, Vladimir Zykov and Sen-Lin Tang, 2020, Spatio-temporal changes in the bacterial community of the meromictic Lake Uchum, Siberia, Microbial Ecology, https://doi.org/10.1007/s00248-020-01592-9
@Ya Shen, Sheng-Chung Chen, Mei-Chin Lai, Hsing-Hua Huang, Hsiu-Hui Chiu, Sen-Lin Tang, Denis Yu Rogozin, Andrey G. Degermendzhy, 2020, Methanolobus halotolerans sp. nov., isolated from a saline lake Tus in Siberia, IJSEM, https://doi.org/10.1099/ijsem.0.004453
@T.Thinesh, R. Meenatchia Anuj, Nishanth Liptona, Rangasamy Anandham, Polpass ArulJose, Sen-Lin Tang, G. Seghal Kirand, Joseph Selvina, 2020, Metagenomic sequencing reveals altered bacterial abundance during coral-sponge interaction: Insights into the invasive process of coral-killing sponge Terpios hoshinota, Microbiological Research, 240:126553
@Naohisa Wada, Hideaki Yuasa, Rei Kajitani, Yasuhiro Gotoh, Yoshitoshi Ogura, Dai Yoshimura, Atsushi Toyoda, Sen-Lin Tang, Yukio Higashimura, Hugh Sweatman, Zac Forsman, Omri Bronstein, Gal Eyal, Nalinee Thongtham, Takehiko Itoh, Tetsuya Hayashi, Nina Yasuda, 2020, A universal subcuticular bacterial symbiont of a coral predator, the crown-of-thorns starfish, Microbiome, 8, 123
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